IL_6WD1_107
3D structure
- PDB id
- 6WD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WD1_107 not in the Motif Atlas
- Homologous match to IL_5J7L_356
- Geometric discrepancy: 0.1955
- The information below is about IL_5J7L_356
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WD1|1|2|G|23
6WD1|1|2|G|24
6WD1|1|2|U|25
6WD1|1|2|C|26
6WD1|1|2|C|27
6WD1|1|2|C|28
*
6WD1|1|2|G|56
6WD1|1|2|A|57
6WD1|1|2|A|58
6WD1|1|2|A|59
6WD1|1|2|C|60
Current chains
- Chain 2
- 5S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
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