3D structure

PDB id
6WD1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUGCAU*AUGG
Length
10 nucleotides
Bulged bases
6WD1|1|3|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD1_156 not in the Motif Atlas
Geometric match to IL_4V88_473
Geometric discrepancy: 0.3339
The information below is about IL_4V88_473
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

6WD1|1|3|C|1051
6WD1|1|3|U|1052
6WD1|1|3|G|1053
6WD1|1|3|C|1054
6WD1|1|3|A|1055
6WD1|1|3|U|1056
*
6WD1|1|3|A|1204
6WD1|1|3|U|1205
6WD1|1|3|G|1206
6WD1|1|3|G|1207

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 4
mRNA
Chain H
30S ribosomal protein S3
Chain O
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:


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