3D structure

PDB id
6WD1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD1_179 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.1274
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6WD1|1|1|U|1851
6WD1|1|1|U|1852
6WD1|1|1|A|1853
6WD1|1|1|A|1854
6WD1|1|1|U|1855
6WD1|1|1|U|1856
6WD1|1|1|G|1857
6WD1|1|1|A|1858
6WD1|1|1|U|1859
6WD1|1|1|G|1860
*
6WD1|1|1|U|1882
6WD1|1|1|U|1883
6WD1|1|1|G|1884
6WD1|1|1|A|1885
6WD1|1|1|U|1886
6WD1|1|1|C|1887
6WD1|1|1|G|1888
6WD1|1|1|A|1889
6WD1|1|1|A|1890
6WD1|1|1|G|1891

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain a
50S ribosomal protein L1

Coloring options:


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