IL_6WD3_036

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

6WD3|1|1|A|1127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD3_036 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

6WD3|1|1|G|1024
6WD3|1|1|G|1025
6WD3|1|1|G|1026
6WD3|1|1|A|1027
6WD3|1|1|A|1028
6WD3|1|1|A|1029
6WD3|1|1|C|1030
*
6WD3|1|1|G|1124
6WD3|1|1|G|1125
6WD3|1|1|A|1126
6WD3|1|1|A|1127
6WD3|1|1|G|1128
6WD3|1|1|A|1129
6WD3|1|1|U|1130
6WD3|1|1|G|1131
6WD3|1|1|U|1132
6WD3|1|1|A|1133
6WD3|1|1|A|1134
6WD3|1|1|C|1135
6WD3|1|1|G|1136
6WD3|1|1|G|1137
6WD3|1|1|G|1138
6WD3|1|1|G|1139
6WD3|1|1|C|1140

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L36

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13

Chain m

50S ribosomal protein L16