IL_6WD3_041

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6WD3|1|1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD3_041 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.2754

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6WD3|1|1|G|1087
6WD3|1|1|A|1088
6WD3|1|1|A|1089
6WD3|1|1|A|1090
6WD3|1|1|G|1091
*
6WD3|1|1|C|1100
6WD3|1|1|U|1101
6WD3|1|1|C|1102

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain i

50S ribosomal protein L11