3D structure

PDB id
6WD3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAAAG*CUC
Length
8 nucleotides
Bulged bases
6WD3|1|1|A|1088
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD3_041 not in the Motif Atlas
Geometric match to IL_5TBW_056
Geometric discrepancy: 0.2754
The information below is about IL_5TBW_056
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

6WD3|1|1|G|1087
6WD3|1|1|A|1088
6WD3|1|1|A|1089
6WD3|1|1|A|1090
6WD3|1|1|G|1091
*
6WD3|1|1|C|1100
6WD3|1|1|U|1101
6WD3|1|1|C|1102

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain i
50S ribosomal protein L11

Coloring options:


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