IL_6WD3_064

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6WD3|1|1|U|1714, 6WD3|1|1|G|1715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD3_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1651

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WD3|1|1|U|1712
6WD3|1|1|A|1713
6WD3|1|1|U|1714
6WD3|1|1|G|1715
6WD3|1|1|U|1716
6WD3|1|1|A|1717
6WD3|1|1|G|1718
*
6WD3|1|1|U|1742
6WD3|1|1|G|1743
6WD3|1|1|A|1744
6WD3|1|1|A|1745
6WD3|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains