IL_6WD3_185

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGA*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD3_185 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3605

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6WD3|1|1|U|2139
6WD3|1|1|G|2140
6WD3|1|1|G|2141
6WD3|1|1|A|2142
*
6WD3|1|1|U|2149
6WD3|1|1|C|2150
6WD3|1|1|U|2151
6WD3|1|1|G|2152

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S11

Chain a

50S ribosomal protein L1