3D structure

PDB id
6WD3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD3_186 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.1516
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

6WD3|1|3|U|409
6WD3|1|3|G|410
6WD3|1|3|A|411
6WD3|1|3|A|412
6WD3|1|3|G|413
6WD3|1|3|A|414
6WD3|1|3|A|415
6WD3|1|3|G|416
*
6WD3|1|3|U|427
6WD3|1|3|G|428
6WD3|1|3|U|429
6WD3|1|3|A|430
6WD3|1|3|A|431
6WD3|1|3|A|432
6WD3|1|3|G|433

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4

Coloring options:


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