3D structure

PDB id
6WD3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAAG*UGUGCCUUCGGGAAC
Length
19 nucleotides
Bulged bases
6WD3|1|3|U|1030, 6WD3|1|3|G|1032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WD3|1|3|G|1003
6WD3|1|3|A|1004
6WD3|1|3|A|1005
6WD3|1|3|G|1006
*
6WD3|1|3|U|1023
6WD3|1|3|G|1024
6WD3|1|3|U|1025
6WD3|1|3|G|1026
6WD3|1|3|C|1027
6WD3|1|3|C|1028
6WD3|1|3|U|1029
6WD3|1|3|U|1030
6WD3|1|3|C|1031
6WD3|1|3|G|1032
6WD3|1|3|G|1033
6WD3|1|3|G|1034
6WD3|1|3|A|1035
6WD3|1|3|A|1036
6WD3|1|3|C|1037

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain S
30S ribosomal protein S14

Coloring options:

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