3D structure

PDB id
6WD5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
6WD5|1|3|U|244, 6WD5|1|3|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD5_123 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.1663
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6WD5|1|3|G|242
6WD5|1|3|A|243
6WD5|1|3|U|244
6WD5|1|3|U|245
6WD5|1|3|A|246
6WD5|1|3|G|247
*
6WD5|1|3|C|277
6WD5|1|3|G|278
6WD5|1|3|A|279
6WD5|1|3|C|280
6WD5|1|3|G|281
6WD5|1|3|A|282
6WD5|1|3|U|283
6WD5|1|3|C|284

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Q
30S ribosomal protein S12
Chain V
30S ribosomal protein S17

Coloring options:


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