IL_6WD7_081

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCCU*AUGUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD7_081 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2876

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6WD7|1|1|A|2101
6WD7|1|1|G|2102
6WD7|1|1|C|2103
6WD7|1|1|C|2104
6WD7|1|1|U|2105
*
6WD7|1|1|A|2184
6WD7|1|1|U|2185
6WD7|1|1|G|2186
6WD7|1|1|U|2187
6WD7|1|1|U|2188

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1