IL_6WD7_093

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6WD7|1|1|A|2572, 6WD7|1|1|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD7_093 not in the Motif Atlas

Geometric match to IL_4WF9_096

Geometric discrepancy: 0.1364

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6WD7|1|1|C|2512
6WD7|1|1|A|2513
*
6WD7|1|1|U|2571
6WD7|1|1|A|2572
6WD7|1|1|C|2573
6WD7|1|1|G|2574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13