3D structure

PDB id
6WD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGCAU*AUGG
Length
10 nucleotides
Bulged bases
6WD7|1|3|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD7_157 not in the Motif Atlas
Geometric match to IL_5UNE_005
Geometric discrepancy: 0.357
The information below is about IL_5UNE_005
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6WD7|1|3|C|1051
6WD7|1|3|U|1052
6WD7|1|3|G|1053
6WD7|1|3|C|1054
6WD7|1|3|A|1055
6WD7|1|3|U|1056
*
6WD7|1|3|A|1204
6WD7|1|3|U|1205
6WD7|1|3|G|1206
6WD7|1|3|G|1207

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 4
mRNA
Chain 7
Transfer RNA; tRNA
Chain H
30S ribosomal protein S3
Chain O
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:


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