IL_6WD7_157

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

6WD7|1|3|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD7_157 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.357

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6WD7|1|3|C|1051
6WD7|1|3|U|1052
6WD7|1|3|G|1053
6WD7|1|3|C|1054
6WD7|1|3|A|1055
6WD7|1|3|U|1056
*
6WD7|1|3|A|1204
6WD7|1|3|U|1205
6WD7|1|3|G|1206
6WD7|1|3|G|1207

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain 7

Transfer RNA; tRNA

Chain H

30S ribosomal protein S3

Chain O

30S ribosomal protein S10

Chain S

30S ribosomal protein S14