IL_6WD8_016
3D structure
- PDB id
- 6WD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6WD8|1|1|G|801, 6WD8|1|1|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WD8_016 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.1404
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WD8|1|1|G|674
6WD8|1|1|A|675
6WD8|1|1|A|676
6WD8|1|1|A|677
6WD8|1|1|C|678
*
6WD8|1|1|G|799
6WD8|1|1|A|800
6WD8|1|1|G|801
6WD8|1|1|A|802
6WD8|1|1|U|803
6WD8|1|1|A|804
6WD8|1|1|G|805
6WD8|1|1|C|806
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
Coloring options: