IL_6WD8_135
3D structure
- PDB id
- 6WD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6WD8|1|3|A|532, 6WD8|1|3|U|534, 6WD8|1|3|A|535
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WD8_135 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.4409
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6WD8|1|3|G|515
6WD8|1|3|U|516
6WD8|1|3|G|517
6WD8|1|3|C|518
6WD8|1|3|C|519
6WD8|1|3|A|520
6WD8|1|3|G|521
*
6WD8|1|3|C|528
6WD8|1|3|G|529
6WD8|1|3|G|530
6WD8|1|3|U|531
6WD8|1|3|A|532
6WD8|1|3|A|533
6WD8|1|3|U|534
6WD8|1|3|A|535
6WD8|1|3|C|536
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA
- Chain 7
- Transfer RNA; tRNA
- Chain H
- 30S ribosomal protein S3
- Chain I
- 30S ribosomal protein S4
- Chain Q
- 30S ribosomal protein S12
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