IL_6WD9_122

3D structure

PDB id

6WD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD9_122 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.3017

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6WD9|1|3|G|203
6WD9|1|3|G|204
6WD9|1|3|A|205
6WD9|1|3|C|206
*
6WD9|1|3|G|213
6WD9|1|3|C|214

Current chains

Chain 3

16S ribosomal RNA

Nearby chains