3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
6WDA|1|1|G|776, 6WDA|1|1|A|788, 6WDA|1|1|A|789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDA_021 not in the Motif Atlas
Homologous match to IL_7A0S_021
Geometric discrepancy: 0.1493
The information below is about IL_7A0S_021
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

6WDA|1|1|G|775
6WDA|1|1|G|776
6WDA|1|1|G|777
*
6WDA|1|1|C|787
6WDA|1|1|A|788
6WDA|1|1|A|789
6WDA|1|1|U|790
6WDA|1|1|C|791

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain b
50S ribosomal protein L2
Chain d
50S ribosomal protein L4
Chain s
50S ribosomal protein L22

Coloring options:


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