IL_6WDA_065

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDA_065 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1807

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6WDA|1|1|U|1720
6WDA|1|1|G|1721
6WDA|1|1|A|1722
6WDA|1|1|G|1723
6WDA|1|1|G|1724
*
6WDA|1|1|U|1736
6WDA|1|1|G|1737
6WDA|1|1|G|1738
6WDA|1|1|A|1739
6WDA|1|1|G|1740

Current chains

Chain 1

23S ribosomal RNA

Nearby chains