IL_6WDA_073
3D structure
- PDB id
- 6WDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6WDA|1|1|A|1938, 6WDA|1|1|U|1944, 6WDA|1|1|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDA_073 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.173
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
6WDA|1|1|C|1934
6WDA|1|1|G|1935
6WDA|1|1|A|1936
6WDA|1|1|A|1937
6WDA|1|1|A|1938
6WDA|1|1|U|1939
6WDA|1|1|U|1940
6WDA|1|1|C|1941
6WDA|1|1|C|1942
6WDA|1|1|U|1943
6WDA|1|1|U|1944
6WDA|1|1|G|1945
*
6WDA|1|1|C|1961
6WDA|1|1|C|1962
6WDA|1|1|U|1963
6WDA|1|1|G|1964
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- 50S ribosomal protein L2
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