3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDA_147 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.1088
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6WDA|1|3|G|887
6WDA|1|3|G|888
6WDA|1|3|A|889
6WDA|1|3|G|890
6WDA|1|3|U|891
6WDA|1|3|A|892
6WDA|1|3|C|893
6WDA|1|3|G|894
*
6WDA|1|3|U|905
6WDA|1|3|A|906
6WDA|1|3|A|907
6WDA|1|3|A|908
6WDA|1|3|A|909
6WDA|1|3|C|910

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain Q
30S ribosomal protein S12

Coloring options:


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