IL_6WDA_176

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDA_176 not in the Motif Atlas

Homologous match to IL_5WT1_001

Geometric discrepancy: 0.3178

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

6WDA|1|7|A|26
6WDA|1|7|G|27
*
6WDA|1|7|C|43
6WDA|1|7|G|44
6WDA|1|7|U|45

Current chains

Chain 7

tRNAPhe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain Q

30S ribosomal protein S12