IL_6WDC_024

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

6WDC|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDC_024 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.2202

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6WDC|1|1|U|847
6WDC|1|1|C|848
*
6WDC|1|1|G|930
6WDC|1|1|U|931
6WDC|1|1|U|932
6WDC|1|1|A|933

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain z

50S ribosomal protein L30