3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDC_097 not in the Motif Atlas
Homologous match to IL_4WF9_100
Geometric discrepancy: 0.1763
The information below is about IL_4WF9_100
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6WDC|1|1|C|2652
6WDC|1|1|U|2653
6WDC|1|1|A|2654
6WDC|1|1|G|2655
6WDC|1|1|U|2656
6WDC|1|1|A|2657
6WDC|1|1|C|2658
*
6WDC|1|1|G|2663
6WDC|1|1|G|2664
6WDC|1|1|A|2665
6WDC|1|1|C|2666
6WDC|1|1|C|2667
6WDC|1|1|G|2668

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain f
50S ribosomal protein L6

Coloring options:


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