3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GAAG*UGUGCCUUCGGGAAC
Length
19 nucleotides
Bulged bases
6WDC|1|3|U|1030, 6WDC|1|3|G|1032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WDC|1|3|G|1003
6WDC|1|3|A|1004
6WDC|1|3|A|1005
6WDC|1|3|G|1006
*
6WDC|1|3|U|1023
6WDC|1|3|G|1024
6WDC|1|3|U|1025
6WDC|1|3|G|1026
6WDC|1|3|C|1027
6WDC|1|3|C|1028
6WDC|1|3|U|1029
6WDC|1|3|U|1030
6WDC|1|3|C|1031
6WDC|1|3|G|1032
6WDC|1|3|G|1033
6WDC|1|3|G|1034
6WDC|1|3|A|1035
6WDC|1|3|A|1036
6WDC|1|3|C|1037

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain S
30S ribosomal protein S14

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1264 s