3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC
Length
35 nucleotides
Bulged bases
6WDC|1|1|U|2132, 6WDC|1|1|A|2171, 6WDC|1|1|U|2172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WDC|1|1|G|2124
6WDC|1|1|G|2125
6WDC|1|1|A|2126
6WDC|1|1|G|2127
6WDC|1|1|G|2128
6WDC|1|1|C|2129
6WDC|1|1|U|2130
6WDC|1|1|U|2131
6WDC|1|1|U|2132
6WDC|1|1|G|2133
6WDC|1|1|A|2134
6WDC|1|1|A|2135
6WDC|1|1|G|2136
6WDC|1|1|U|2137
*
6WDC|1|1|A|2154
6WDC|1|1|U|2155
6WDC|1|1|G|2156
6WDC|1|1|G|2157
6WDC|1|1|A|2158
6WDC|1|1|G|2159
6WDC|1|1|C|2160
6WDC|1|1|C|2161
6WDC|1|1|G|2162
6WDC|1|1|A|2163
6WDC|1|1|C|2164
6WDC|1|1|C|2165
6WDC|1|1|U|2166
6WDC|1|1|U|2167
6WDC|1|1|G|2168
6WDC|1|1|A|2169
6WDC|1|1|A|2170
6WDC|1|1|A|2171
6WDC|1|1|U|2172
6WDC|1|1|A|2173
6WDC|1|1|C|2174

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain a
50S ribosomal protein L1

Coloring options:

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