IL_6WDF_097

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDF_097 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1076

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6WDF|1|1|C|2652
6WDF|1|1|U|2653
6WDF|1|1|A|2654
6WDF|1|1|G|2655
6WDF|1|1|U|2656
6WDF|1|1|A|2657
6WDF|1|1|C|2658
*
6WDF|1|1|G|2663
6WDF|1|1|G|2664
6WDF|1|1|A|2665
6WDF|1|1|C|2666
6WDF|1|1|C|2667
6WDF|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6