3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDF_133 not in the Motif Atlas
Geometric match to IL_5J7L_023
Geometric discrepancy: 0.1522
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6WDF|1|3|G|450
6WDF|1|3|A|451
6WDF|1|3|A|452
6WDF|1|3|G|453
6WDF|1|3|G|454
6WDF|1|3|G|455
*
6WDF|1|3|C|477
6WDF|1|3|A|478
6WDF|1|3|U|479
6WDF|1|3|U|480
6WDF|1|3|G|481
6WDF|1|3|A|482
6WDF|1|3|C|483

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain U
30S ribosomal protein S16

Coloring options:


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