3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDF_148 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.113
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6WDF|1|3|G|887
6WDF|1|3|G|888
6WDF|1|3|A|889
6WDF|1|3|G|890
6WDF|1|3|U|891
6WDF|1|3|A|892
6WDF|1|3|C|893
6WDF|1|3|G|894
*
6WDF|1|3|U|905
6WDF|1|3|A|906
6WDF|1|3|A|907
6WDF|1|3|A|908
6WDF|1|3|A|909
6WDF|1|3|C|910

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain Q
30S ribosomal protein S12

Coloring options:


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