3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
6WDF|1|1|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDF_182 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.1005
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

6WDF|1|1|G|1666
6WDF|1|1|G|1667
6WDF|1|1|A|1668
6WDF|1|1|A|1669
6WDF|1|1|C|1670
6WDF|1|1|U|1671
6WDF|1|1|A|1672
6WDF|1|1|G|1673
6WDF|1|1|G|1674
*
6WDF|1|1|C|1990
6WDF|1|1|U|1991
6WDF|1|1|G|1992
6WDF|1|1|U|1993
6WDF|1|1|C|1994

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14

Coloring options:


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