IL_6WDG_026

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDG_026 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WDG|1|1|G|856
6WDG|1|1|G|857
6WDG|1|1|G|858
6WDG|1|1|G|859
6WDG|1|1|U|860
6WDG|1|1|A|861
6WDG|1|1|G|862
*
6WDG|1|1|C|915
6WDG|1|1|G|916
6WDG|1|1|A|917
6WDG|1|1|A|918
6WDG|1|1|U|919
6WDG|1|1|A|920
6WDG|1|1|C|921

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27

Chain z

50S ribosomal protein L30