IL_6WDI_029
3D structure
- PDB id
- 6WDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDI_029 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.2925
- The information below is about IL_5J7L_274
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6WDI|1|1|G|875
6WDI|1|1|C|876
6WDI|1|1|A|877
6WDI|1|1|A|878
6WDI|1|1|G|879
*
6WDI|1|1|C|898
6WDI|1|1|A|899
6WDI|1|1|A|900
6WDI|1|1|C|901
6WDI|1|1|C|902
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain m
- 50S ribosomal protein L16
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