3D structure

PDB id
6WDI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CGAAG*CUAAG
Length
10 nucleotides
Bulged bases
6WDI|1|1|A|1420
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDI_051 not in the Motif Atlas
Homologous match to IL_5J7L_295
Geometric discrepancy: 0.2048
The information below is about IL_5J7L_295
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6WDI|1|1|C|1417
6WDI|1|1|G|1418
6WDI|1|1|A|1419
6WDI|1|1|A|1420
6WDI|1|1|G|1421
*
6WDI|1|1|C|1577
6WDI|1|1|U|1578
6WDI|1|1|A|1579
6WDI|1|1|A|1580
6WDI|1|1|G|1581

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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