IL_6WDI_063

3D structure

PDB id

6WDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6WDI|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDI_063 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1364

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6WDI|1|1|C|1686
6WDI|1|1|G|1687
6WDI|1|1|U|1688
6WDI|1|1|A|1689
6WDI|1|1|A|1690
6WDI|1|1|C|1691
*
6WDI|1|1|G|1696
6WDI|1|1|G|1697
6WDI|1|1|A|1698
6WDI|1|1|G|1699
6WDI|1|1|A|1700
6WDI|1|1|A|1701
6WDI|1|1|G|1702

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2