IL_6WDI_096

3D structure

PDB id

6WDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDI_096 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.175

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WDI|1|1|C|2652
6WDI|1|1|U|2653
6WDI|1|1|A|2654
6WDI|1|1|G|2655
6WDI|1|1|U|2656
6WDI|1|1|A|2657
6WDI|1|1|C|2658
*
6WDI|1|1|G|2663
6WDI|1|1|G|2664
6WDI|1|1|A|2665
6WDI|1|1|C|2666
6WDI|1|1|C|2667
6WDI|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6