3D structure

PDB id
6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6WDJ|1|1|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDJ_045 not in the Motif Atlas
Homologous match to IL_5J7L_288
Geometric discrepancy: 0.1644
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

6WDJ|1|1|C|1208
6WDJ|1|1|U|1209
6WDJ|1|1|G|1210
6WDJ|1|1|C|1211
6WDJ|1|1|G|1212
6WDJ|1|1|A|1213
6WDJ|1|1|A|1214
6WDJ|1|1|G|1215
*
6WDJ|1|1|U|1234
6WDJ|1|1|G|1235
6WDJ|1|1|G|1236
6WDJ|1|1|A|1237
6WDJ|1|1|G|1238

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain q
50S ribosomal protein L20

Coloring options:


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