IL_6WDJ_048

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6WDJ|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDJ_048 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2132

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6WDJ|1|1|C|1319
6WDJ|1|1|C|1320
6WDJ|1|1|A|1321
6WDJ|1|1|A|1322
6WDJ|1|1|C|1323
*
6WDJ|1|1|G|1331
6WDJ|1|1|G|1332
6WDJ|1|1|G|1333

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23