IL_6WDJ_133
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDJ_133 not in the Motif Atlas
- Geometric match to IL_5J7L_023
- Geometric discrepancy: 0.1493
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6WDJ|1|3|G|450
6WDJ|1|3|A|451
6WDJ|1|3|A|452
6WDJ|1|3|G|453
6WDJ|1|3|G|454
6WDJ|1|3|G|455
*
6WDJ|1|3|C|477
6WDJ|1|3|A|478
6WDJ|1|3|U|479
6WDJ|1|3|U|480
6WDJ|1|3|G|481
6WDJ|1|3|A|482
6WDJ|1|3|C|483
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain U
- 30S ribosomal protein S16
Coloring options: