IL_6WDJ_181
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 6WDJ|1|1|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDJ_181 not in the Motif Atlas
- Homologous match to IL_5J7L_386
- Geometric discrepancy: 0.1135
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
6WDJ|1|1|G|1666
6WDJ|1|1|G|1667
6WDJ|1|1|A|1668
6WDJ|1|1|A|1669
6WDJ|1|1|C|1670
6WDJ|1|1|U|1671
6WDJ|1|1|A|1672
6WDJ|1|1|G|1673
6WDJ|1|1|G|1674
*
6WDJ|1|1|C|1990
6WDJ|1|1|U|1991
6WDJ|1|1|G|1992
6WDJ|1|1|U|1993
6WDJ|1|1|C|1994
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
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