IL_6WDK_039
3D structure
- PDB id
- 6WDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6WDK|1|1|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDK_039 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2502
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6WDK|1|1|C|1043
6WDK|1|1|C|1044
6WDK|1|1|C|1045
6WDK|1|1|A|1046
6WDK|1|1|G|1047
6WDK|1|1|A|1048
6WDK|1|1|C|1049
6WDK|1|1|A|1050
6WDK|1|1|G|1051
*
6WDK|1|1|U|1108
6WDK|1|1|C|1109
6WDK|1|1|G|1110
6WDK|1|1|A|1111
6WDK|1|1|G|1112
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain h
- 50S ribosomal protein L10
Coloring options: