IL_6WDK_041

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6WDK|1|1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDK_041 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2848

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6WDK|1|1|G|1087
6WDK|1|1|A|1088
6WDK|1|1|A|1089
6WDK|1|1|A|1090
6WDK|1|1|G|1091
*
6WDK|1|1|C|1100
6WDK|1|1|U|1101
6WDK|1|1|C|1102

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain i

50S ribosomal protein L11