IL_6WDK_054

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

6WDK|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDK_054 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1319

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WDK|1|1|U|1468
6WDK|1|1|A|1469
6WDK|1|1|A|1470
6WDK|1|1|G|1471
*
6WDK|1|1|U|1520
6WDK|1|1|G|1521
6WDK|1|1|A|1522
6WDK|1|1|U|1523
6WDK|1|1|G|1524

Current chains

Chain 1

23S ribosomal RNA

Nearby chains