IL_6WDK_058

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDK_058 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2403

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6WDK|1|1|C|1526
6WDK|1|1|G|1527
6WDK|1|1|A|1528
6WDK|1|1|G|1529
6WDK|1|1|G|1530
*
6WDK|1|1|C|1541
6WDK|1|1|U|1542
6WDK|1|1|G|1543
6WDK|1|1|A|1544
6WDK|1|1|A|1545
6WDK|1|1|G|1546

Current chains

Chain 1

23S ribosomal RNA

Nearby chains