3D structure

PDB id
6WDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDL_177 not in the Motif Atlas
Homologous match to IL_5J7L_300
Geometric discrepancy: 0.2564
The information below is about IL_5J7L_300
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6WDL|1|1|U|1474
6WDL|1|1|G|1475
6WDL|1|1|U|1476
6WDL|1|1|A|1477
6WDL|1|1|G|1478
*
6WDL|1|1|U|1513
6WDL|1|1|G|1514
6WDL|1|1|A|1515
6WDL|1|1|G|1516
6WDL|1|1|G|1517

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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