3D structure

PDB id
6WDM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGAGG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDM_066 not in the Motif Atlas
Homologous match to IL_5J7L_310
Geometric discrepancy: 0.1822
The information below is about IL_5J7L_310
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

6WDM|1|1|U|1720
6WDM|1|1|G|1721
6WDM|1|1|A|1722
6WDM|1|1|G|1723
6WDM|1|1|G|1724
*
6WDM|1|1|U|1736
6WDM|1|1|G|1737
6WDM|1|1|G|1738
6WDM|1|1|A|1739
6WDM|1|1|G|1740

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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