IL_6WDM_135

3D structure

PDB id

6WDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6WDM|1|3|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDM_135 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1354

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6WDM|1|3|C|569
6WDM|1|3|G|570
6WDM|1|3|U|571
6WDM|1|3|A|572
6WDM|1|3|A|573
6WDM|1|3|A|574
6WDM|1|3|G|575
*
6WDM|1|3|C|880
6WDM|1|3|G|881

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain V

30S ribosomal protein S17