IL_6WDM_181
3D structure
- PDB id
- 6WDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUAAUUGAUG*UUGAUCGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDM_181 not in the Motif Atlas
- Homologous match to IL_5J7L_387
- Geometric discrepancy: 0.1454
- The information below is about IL_5J7L_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61249.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6WDM|1|1|U|1851
6WDM|1|1|U|1852
6WDM|1|1|A|1853
6WDM|1|1|A|1854
6WDM|1|1|U|1855
6WDM|1|1|U|1856
6WDM|1|1|G|1857
6WDM|1|1|A|1858
6WDM|1|1|U|1859
6WDM|1|1|G|1860
*
6WDM|1|1|U|1882
6WDM|1|1|U|1883
6WDM|1|1|G|1884
6WDM|1|1|A|1885
6WDM|1|1|U|1886
6WDM|1|1|C|1887
6WDM|1|1|G|1888
6WDM|1|1|A|1889
6WDM|1|1|A|1890
6WDM|1|1|G|1891
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain a
- 50S ribosomal protein L1
Coloring options: