IL_6WDR_011

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6WDR|1|2|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1544

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6WDR|1|2|G|143
6WDR|1|2|U|144
6WDR|1|2|A|145
6WDR|1|2|U|146
6WDR|1|2|A|147
6WDR|1|2|A|148
6WDR|1|2|C|149
*
6WDR|1|2|G|428
6WDR|1|2|C|429
6WDR|1|2|U|430
6WDR|1|2|A|431
6WDR|1|2|A|432
6WDR|1|2|U|433
6WDR|1|2|A|434
6WDR|1|2|C|435

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain Y

40S ribosomal protein S24-A