IL_6WDR_030

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

6WDR|1|2|G|802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_030 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3784

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6WDR|1|2|G|777
6WDR|1|2|A|778
6WDR|1|2|G|779
*
6WDR|1|2|C|799
6WDR|1|2|G|800
6WDR|1|2|A|801
6WDR|1|2|G|802
6WDR|1|2|G|803
6WDR|1|2|A|804
6WDR|1|2|A|805
6WDR|1|2|C|806

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A