IL_6WDR_036
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUAAC*GCGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDR_036 not in the Motif Atlas
- Geometric match to IL_1L9A_008
- Geometric discrepancy: 0.3867
- The information below is about IL_1L9A_008
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WDR|1|2|G|949
6WDR|1|2|C|950
6WDR|1|2|U|951
6WDR|1|2|A|952
6WDR|1|2|A|953
6WDR|1|2|C|954
*
6WDR|1|2|G|976
6WDR|1|2|C|977
6WDR|1|2|G|978
6WDR|1|2|A|979
6WDR|1|2|A|980
6WDR|1|2|C|981
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain G
- 40S ribosomal protein S6-A
Coloring options: