IL_6WDR_038

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_038 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.2406

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6WDR|1|2|A|992
6WDR|1|2|C|993
*
6WDR|1|2|G|1048
6WDR|1|2|A|1049
6WDR|1|2|A|1050
6WDR|1|2|U|1051

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7-A

Chain L

40S ribosomal protein S11-A

Chain W

40S ribosomal protein S22-A

Chain X

40S ribosomal protein S23-A